Browsing by Author "Erkan, S."

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Occurrence and Distribution of Stone Fruit Viruses and Viroids in Commercial Plantings of Prunus Species in Western Anatolia, Turkey
(Springer, 2007) Gumus, M.; Paylan, I. C.; Matic, S.; Myrta, A.; Sipahioglu, H. M.; Erkan, S.
Symptoms of virus and viroid infections have been observed during the last ten years in stone fruit crops, however, no relative incidences of virus and viroid diseases have been reported on stone fruit crops in western Anatolia, Turkey. Large-scale surveys were conducted from June to August between the years 2004 and 2006 in the main stone fruit growing orchards and mother blocks of western Anatolia to determine the seven most important virus and two important viroid affecting Prunus species. The results of serological (ELISA) and molecular (PCR and tissue-printing molecular hybridization) tests demonstrated the occurrence of Plum pox virus (PPV), Prune dwarf virus (PDV), Prunus necrotic ringspot virus (PNRSV), Apple chlorotic leaf spot virus (ACLSV), Apple mosaic virus (ApMV), Apricot latent virus (ApLV), Plum bark necrosis stem pitting-associated virus (PBNSPaV), Peach latent mosaic viroid (PLMVd), and Hop stunt viroid (HSVd) in tested 1732 specimens of stone fruits. The overall infection level with these graft-transmissible agents was 30%. The results showed that PDV is predominant in stone fruit crops. To our knowledge, PBNSPaV was reported for the first time in western Anatolia. The results obtained in this study illustrate a need for certification or clean stock program to prevent the occurrence and the spread of graft transmissible agents in western Anatolia.
Optimization of Cdna Amplification of Apricot Latent Virus (Aplv) From Various Plant Tissues Sources
(Asian Network for Scientific Information, 2007) Gumus, M.; Sipahioǧlu, H.M.; Paylan, I.C.; Erkan, S.
Although the reverse transcriptase polymerase chain reaction (RT-PCR) procedure is basically simple operation, often it is not possible to achieve optimum results without optimizing the protocols. An RT-PCR method targeting a 200 bp sequence of the CP gene of Apricot Latent Virus (ApLV) was used as a model to improve the detection limit and to compare the behavior of three different plant tissues in a RT-PCR assay. A number of factors should be considered when selecting the optimal system for RT-PCR. Important considerations include the optimal concentrations of MgCl2, dNTP, Taq DNA polymerase enzyme, specific primer and the amount of cDNA for the downstream applications. This study therefore discusses a series of critical PCR parameters and feasible strategies for optimization of RT-PCR detection of ApLV. © 2007 Asian Network for Scientific Information.