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Ssr Markers-Based Molecular Characterization and Genetic Diversity in Pomegranate (Punica Granatum L.) Genotypes

dc.authorscopusid 57217183569
dc.authorscopusid 57204876211
dc.authorscopusid 25229817400
dc.authorscopusid 6603328927
dc.authorscopusid 57204880171
dc.authorwosid Kafkas, Nesibe/E-4415-2019
dc.contributor.author Polat, Yakup
dc.contributor.author Karci, Harun
dc.contributor.author Celik, Ferit
dc.contributor.author Kafkas, Salih
dc.contributor.author Kafkas, Nesibe Ebru
dc.date.accessioned 2025-05-10T17:29:24Z
dc.date.available 2025-05-10T17:29:24Z
dc.date.issued 2025
dc.department T.C. Van Yüzüncü Yıl Üniversitesi en_US
dc.department-temp [Polat, Yakup; Celik, Ferit] Yuzuncu Yil Univ, Dept Hort, Fac Agr, TR-65090 Van, Turkiye; [Karci, Harun; Kafkas, Salih; Kafkas, Nesibe Ebru] Univ Cukurova, Fac Agr, Dept Hort, TR-01330 Adana, Turkiye en_US
dc.description.abstract Pomegranate (Punica granatum L.) is the most important Lythraceae family species of the Myrtales order. It is one of the quite old fruit species and the pomegranate history goes back about five thousand years, is consumed by people for food and medicine. In the current study, 40 simple sequence repeat (SSR) primers were screed to determine the genetic relationships of 127 pomegranate genotypes sampled from distinct locations with genetic resources in Turkiye. In total, 34 SSRs generated a total of 177 alleles, the average number of effective alleles (Ne = 2.50) and the average expected heterozygosity value (He = 0.53) were estimated., The observed heterozygosity was measured for each marker with an average of 0.36. The average polymorphism information content (PIC) was estimated as 0.48. Phylogenetic tree was constructed using a total of 34 polymorphic markers based on unweighted pair group method with arithmetic mean (UPGMA) analysis of pomegranate genotypes, and genotypes were clustered into two major groups with subgroups. STRUCTURE analysis was also carried out to calculate the possible population number according to Delta K value that has picked the point corresponding to population number. Delta K was picked in K = 2, population was divided to two main clusters. The results of UPGMA and STRUCTURE analyses were examined, and both analyses were found to corroborate each other. The analysis of molecular variance exhibited 38 and 36% of the total variance between and within the populations. This is the first comprehensive molecular report enjoyed in Turkiye germplasm for pomegranate. These results can be utilized to establish novel breeding orchards or consist of the populations and to reveal the marker-trait association. Hence, it brings knowledge quality in pomegranate breeding programs. en_US
dc.description.sponsorship Van Yznc Yimath;l University Scientific Research Projects Unit [9622] en_US
dc.description.sponsorship The authors thank the Van Yuzuncu Y & imath;l University, Scientific Research Projects Unit (Project No: 9622) for financial support. en_US
dc.description.woscitationindex Science Citation Index Expanded
dc.identifier.doi 10.1007/s10722-025-02336-9
dc.identifier.issn 0925-9864
dc.identifier.issn 1573-5109
dc.identifier.scopus 2-s2.0-105000033148
dc.identifier.scopusquality Q3
dc.identifier.uri https://doi.org/10.1007/s10722-025-02336-9
dc.identifier.uri https://hdl.handle.net/20.500.14720/12322
dc.identifier.wos WOS:001443886000001
dc.identifier.wosquality Q2
dc.language.iso en en_US
dc.publisher Springer en_US
dc.relation.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
dc.rights info:eu-repo/semantics/openAccess en_US
dc.subject Pomegranate en_US
dc.subject Punica Granatum L. en_US
dc.subject Molecular Characterization en_US
dc.subject Ssr en_US
dc.subject Structure en_US
dc.title Ssr Markers-Based Molecular Characterization and Genetic Diversity in Pomegranate (Punica Granatum L.) Genotypes en_US
dc.type Article en_US

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